Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------------AVASCGQVVSYLAPCIGYAMGRERAPGGGC---CTGVRSLNAAAA-----------TPADRQATCTCLKQQTSGM-----GGIKPDLVAGIPSKCGVNIPYAISPRTDCSKVR--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA------GSVVDALRAVR--NAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAE-TGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29124 for 414 contacts (-70.3/contact) +
2D Compatibility (PS) -8596 + (NN) -2249 + (LL) 448
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -41471.0 ( -100.17 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: