Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSRLHCFVGYFDELLILLYLKL-KWYYVIKYCYCC------KFSEIDLIVSKKKELIFIEVKASLLGEDILISYLQYQSIVNSSKYFLSEKLSFLDYPIRYDLCFLSLTKRACLYKKCLA
3SM4 Chain:A ((79-139))
----KALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGN---GLELACPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKNAWYFANYDPRMKREGLHYVVI
General information:
TITO was launched using:
RESULT:
Template:
3SM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36487 for 283 contacts (-128.9/contact) +
2D Compatibility (PS) -5839 + (NN) -566 + (LL) 956
1D Compatibility (HY) 1600 + (ID) 300
Total energy: -40636.0 ( -143.59 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_3SM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SM4-query.scw
PDB file :
Tito_Scwrl_3SM4.pdb
: