Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVRTVGKSAKKFVTGVIHIRATFNNTFINVTDVQGNTLYQTSVGAHGFSGSRKSTPYAAGKASEVAAKTAIEKFGMKVVSVIIRGPGFGTEAAVKALQSCGLTVTSIADKTAISHNGCRLRKKRRV
4WT8 Chain:K ((2-116))
-----------RQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAA-QLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
General information:
TITO was launched using:
RESULT:
Template:
4WT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51111 for 852 contacts (-60.0/contact) +
2D Compatibility (PS) -12570 + (NN) -3591 + (LL) 708
1D Compatibility (HY) -4800 + (ID) 2600
Total energy: -73964.0 ( -86.81 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_4WT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WT8-query.scw
PDB file :
Tito_Scwrl_4WT8.pdb
: