Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MECKLVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPYSQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNNQVIILNNLNINVKKTSEMCKYIQNFKFSS---FLIVGDYEDSLLRAARNLHYVNLIKPIGLNVFDILNHECIMLTSDALRYLEGRLL
3PIO Chain:C ((25-193))
-----------------------------GVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENT-RRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEI------
General information:
TITO was launched using:
RESULT:
Template:
3PIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83421 for 1038 contacts (-80.4/contact) +
2D Compatibility (PS) -17859 + (NN) -7075 + (LL) 2548
1D Compatibility (HY) -11200 + (ID) 3150
Total energy: -120157.0 ( -115.76 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_3PIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIO-query.scw
PDB file :
Tito_Scwrl_3PIO.pdb
: