Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMAHIKEASDTNFSEMYGSLFPSKENGKGTWIDWKAAFKQQKLLEAESNVMLLEISYSLLKENQLYKEEVGTKLDNIIKNNQGNVRKGRQIC
3FOC Chain:A ((401-440))
----------------------------------KADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKELQ-------
General information:
TITO was launched using:
RESULT:
Template:
3FOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3548 for 158 contacts (22.5/contact) +
2D Compatibility (PS) -4193 + (NN) -2196 + (LL) 1892
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -3649.0 ( -23.09 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_3FOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FOC-query.scw
PDB file :
Tito_Scwrl_3FOC.pdb
: