Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQI-NQKNIPVSFFKSKHALGKHVGINVNATIVALIK
1PXW Chain:A ((40-108))
----------------GTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIE
General information:
TITO was launched using:
RESULT:
Template:
1PXW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52971 for 475 contacts (-111.5/contact) +
2D Compatibility (PS) -7370 + (NN) -1179 + (LL) 1644
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -64826.0 ( -136.48 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1PXW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PXW-query.scw
PDB file :
Tito_Scwrl_1PXW.pdb
: