Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIFKISFLILLVVIVSSYYGESFVLADNNPIVNSENGSDNNFESGTIERNQNELYEVGDYSTPLTERVFGKDQRTVVNNILQRPYKQTVLLNMTFSNNRVYKGTGTMIGKDIVLTAAHNVYSKDDKGWAKKIDVYAGVNGQTYTIGKAFSHKFFVSKTWINNLTIV
4NA8 Chain:A ((12-65))
--------------------------------------------------------------------------------------WPWQVTLHTTSPTQRHLCG-GSIIGNQWILTAAHCFYGVES---PKILRVYSGILNQS------------------------
General information:
TITO was launched using:
RESULT:
Template:
4NA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11565 for 273 contacts (-42.4/contact) +
2D Compatibility (PS) -5900 + (NN) -3130 + (LL) 7164
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -18781.0 ( -68.79 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_4NA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NA8-query.scw
PDB file :
Tito_Scwrl_4NA8.pdb
: