Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAAGISTAQFDCIAQIGLDKEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTKTG---REKHITLTEKG-QACYRENVPKQEAFQQAQFDKLTRDEQKELLKLLKKLGE
3BDD Chain:A ((28-133))
----------------------------------GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTSMNQILTVEESEQFLATLDKL--
General information:
TITO was launched using:
RESULT:
Template:
3BDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32672 for 612 contacts (-53.4/contact) +
2D Compatibility (PS) -11299 + (NN) -5970 + (LL) 3096
1D Compatibility (HY) -6000 + (ID) 1500
Total energy: -54345.0 ( -88.80 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_3BDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BDD-query.scw
PDB file :
Tito_Scwrl_3BDD.pdb
: