Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTENRDCVYLLKSGILAGYIDF--DNDKIYSIFTSNFFMGYYTIFDNSSLVLTYQTLTECELIIYKKKDIEYSLSLFPENFSFQYTIMRTIAKHGY----YKSLLQYRDKKDQLAFVFEMLVKILDIPVEDGVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVKLQWRINME-ALSEKNNSIN
3E6C Chain:C ((28-227))
----------------YTQMGLIRDFAKGSAVIMPGEE-ITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTG---NNIYATAMEPTRTCWFSEKSLRTVFR---TDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYELCSSQGKRVG-DTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSE---
General information:
TITO was launched using:
RESULT:
Template:
3E6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112840 for 1325 contacts (-85.2/contact) +
2D Compatibility (PS) -20673 + (NN) -3207 + (LL) 1648
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -140222.0 ( -105.83 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3E6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E6C-query.scw
PDB file :
Tito_Scwrl_3E6C.pdb
: