Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFFEEWGPILWQGFLETLTMTGITLVISLAIGLPLGVFLTLTRKGGQSENLVAYSILNWVINILRSLPFIILLFLMIPVTRFVVGTT-------------------IGIQGVIMPLVVFTAPYIARLMESALLEVDRGVVEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGLIGATAMAGLVGA--GG-------------LGTIAYQYGFQ---RFEPTVMYTTIIILIIMVQALQSFGNFLSRRLKKD
3RLF Chain:F ((275-503))
---------KPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEA-------LRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAI------------
General information:
TITO was launched using:
RESULT:
Template:
3RLF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187053 for 1266 contacts (-147.8/contact) +
2D Compatibility (PS) -19465 + (NN) 1262 + (LL) 1236
1D Compatibility (HY) -16400 + (ID) 1300
Total energy: -221720.0 ( -175.13 by residue)
QMean score : 0.199
(partial model without unconserved sides chains):
PDB file :
Tito_3RLF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLF-query.scw
PDB file :
Tito_Scwrl_3RLF.pdb
: