Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------VIYYICALYTFISALVSFGFSLDALLKSRKVNGDALINAKYAVSRSLSLLIVALGLFIFKSDAFLVALSLVMIGAQLFDGIIGIKISTFKTVGPLLTAVGNVIMLILFLTI
4OM3 Chain:A ((10-126))
KFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIGQQQLQAQHLSH
General information:
TITO was launched using:
RESULT:
Template:
4OM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27811 for 474 contacts (-58.7/contact) +
2D Compatibility (PS) -11262 + (NN) -5227 + (LL) 0
1D Compatibility (HY) 4000 + (ID) 650
Total energy: -40950.0 ( -86.39 by residue)
QMean score : 0.039
(partial model without unconserved sides chains):
PDB file :
Tito_4OM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OM3-query.scw
PDB file :
Tito_Scwrl_4OM3.pdb
: