Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNRRERRKHKRRKNMIIVLSTVFLMFIATSWMIYEFKSKQEQTVSAPTKKKAATATNPSENAATNEPEETKDPEPVEEKPKETIVKNQEIDNYLQKIGFSGSALVVRDGETIIQKGYMYANRDDKVLNTPDTLFYIGSSQKAIIATALLQLEEKGKINTNDPISKYIPDFPNGNKILVKNFMNHTSGIVGRPN-LTSNMTP------------DQIVKAIEKRGIKSQPG-KWDYMDANYTVVGYLVEKISGQPLATYLQENIFNPAGMKHTGYYQKDVDGGKNVSTGYKI-DENGVFQSPKLADLTK-----LYGAGDISMSTTDMYLFDKALMDKKLISEASLKKM---FTKGSKSTYGMGFY-----VDPGSYNSHGVVTGWDVSNSFSHTGRTYVILFSNVQNYIASFGKVNNDIYGFLNK |
1CEG Chain:A ((22-329)) | -------------------------------------------------------------------------------------------------GAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAG----GALVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVTALANTSNNV---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CEG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112634 for 2409 contacts (-46.8/contact) +
2D Compatibility (PS) -31434 + (NN) -24078 + (LL) 8400
1D Compatibility (HY) -10400 + (ID) 4400
Total energy: -174546.0 ( -72.46 by residue)
QMean score : 0.539
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