Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNKVPASFNKWIEKVKTTFPENEKLHRMFEKCFTNTYTTTLQETEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEEDEEMATVIENLVKLQTKCILHDPYANAFNKSANGAGF-QNDKTAMTNLVWERKYEIDSLCYPIQLAYLLWKSTNRTGHFTEEFRKALHQIIEVFKIEQKHTEQSPYRFERENVRQSDTLNNNGKGTDVSYTGMSWSGFRPSDDACMYGYLVPSNMFLVVVMDYVQEI-AATFYPEDKELPKESSDLRKEVAAGIETYAKQVHPYYGDVYAYEVDGTGRKLFMDDANVPSLLAATYLGFCEKTDPAYQATRKLILSRENPYFVEGSVLTGIGSPHTPDHYVWPIALSIEGLTAETEAEKQAILEMLIAGDGGTDYMHEGVNASNPAEFTRDWFAWSNAMFSEFVLSLCGVYVKGSPLSK |
3QSP Chain:B ((10-425)) | ----------EWLDEVAERAKDYPEWVDVFERCYTDTLDNTVEILEDGSTFVLTGDIPAMWLRDSTAQLRPYLHVAKRDALLRQTIAGLVKRQMTLVLKDPYANSFNIEENWKGHHETDHTDLNGWIWERKYEVDSLCYPLQLAYLLWKETGETSQFDEIFVAATKEILHLWTVEQDH-KNSPYRFVRDTDRKEDTLVNDGFGPDFAVTGMTWSAFRPSDDCCQYSYLIPSNMFAVVVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNYAYTTNSKGEKIYAFEVDGLGNASIMDDPNVPSLLAAPYLGYCSVDDEVYQATRRTILSSENPYFYQGEYASGLGSSHTFYRYIWPIALSIQGLTTRDKAEKKFLLDQLVACDGGTGVMHESFHVDDPTLYSREWFSWANMMFCELVLDYLDI--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QSP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201529 for 3754 contacts (-53.7/contact) +
2D Compatibility (PS) -44763 + (NN) -29571 + (LL) 736
1D Compatibility (HY) -43600 + (ID) 10350
Total energy: -329077.0 ( -87.66 by residue)
QMean score : 0.482
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