Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MVIIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIAR--------RQHEQEVLILARMAVQTDQKILEANGVNIRIEESKNKIVLFEGNKEILHVSKVKG--------------------
1LQP Chain:A ((1-134))
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYGGPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAPYAGMRFA
General information:
TITO was launched using:
RESULT:
Template:
1LQP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21970 for 670 contacts (-32.8/contact) +
2D Compatibility (PS) -10619 + (NN) 2627 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -31712.0 ( -47.33 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_1LQP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQP-query.scw
PDB file :
Tito_Scwrl_1LQP.pdb
: