Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKTKFSDPLEQLAKKRKRKTLFKTVVLALITVLLVVGIAFKGFTYLTSKNGQKTYHNFELLSEIAYPNISYDSLYYQPSGQFTGKVHADRFKDIDGVQIPYSSFEENYSISGTFGTNADEKSEKNGLYDRGTRQKVPQFFNKNVKYKKGEAKTTPTNDLKYVNKLNNDLIEIAITFDKSYSYKEIKTMIPNNIKQNWLWIGTSTELDTSYWPTKY--QFGTDPETLNTPQIFI--DKIKENLKGNSKVYFNNINIYSDLEKYAKKYDKVNNSDKLKFSGIILTGKAENFKQLKEKEWVHASSIGANIEYKPYYKLDKE |
| 3GFV Chain:A ((62-172)) | -------------------------------------------------------------------------------------------------------------------------------------KQVLPKYLSKFKDDKYADVGSLKEPDFDKVAELDPDL--IIISARQSESYKEFSKIAPT------IYLGVDT--------AKYMESFKSDAETIG--KIFDKEDKVKDELA-------NIDHSIADVKKTAEKLNKNGLVIMANDGKISAFGPKSRYGLIHDVFGVAPADQNIKASTHGQSVSYEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 14042 for 566 contacts (24.8/contact) +
2D Compatibility (PS) -11225 + (NN) -3243 + (LL) 9000
1D Compatibility (HY) -6000 + (ID) 1850
Total energy: 724.0 ( 1.28 by residue)
QMean score : 0.215
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