Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNKKNNYDLMYFIPLVFLIYPIGGILYYHYPFWTLFFTLAFVGAYLYSVIIRGESKYHMIAWSTMLTYIFYMTIFINSGFIWYIYFLSNLLVYRFRDKLKSFRFISFACTLATVVFLCFFKASDFGDRIMFLIVPIFCIGYMWIAIENRNSEEQREKIAEQNQYINILSAENERNRIGRDLHDSLGHTFAMMTLKTELALKLLEKRNYDKVQKELSELNHISHQSMSEVRQIVSNLKYRTVVEEIDELYRLFQLSNIKLTVVNKLETSQLSPVTQSTITMILKELSNNIVKHAEADSVELSLVRQGATINIEMIDNGCGFTNLDGDEFHSIQERLTIVEGTLTILSRSKPTHIQVVLKEV |
| 4GT8 Chain:A ((4-90)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKDKSLGEGIKDLVIDLQ-KKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGF-NVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GT8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44976 for 543 contacts (-82.8/contact) +
2D Compatibility (PS) -9411 + (NN) -4215 + (LL) 21120
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -44132.0 ( -81.27 by residue)
QMean score : 0.673
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