Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQSLNKTVEFQTTGVSYLGMGNKVGKFLVGDQALEFYNDKNVNDYIQIPWTSINQIGANVSRKKISRHFEVFTDQ-GKFLFASKDSGTILKHARRHIGDDKVVKLPTLIQTILKIFKFKK
3PVL Chain:A ((497-567))
---------------------------VAVNWTGVYFVDEQE-QVLLELSFPEIMAVSSSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPNSGFLS
General information:
TITO was launched using:
RESULT:
Template:
3PVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40316 for 430 contacts (-93.8/contact) +
2D Compatibility (PS) -7312 + (NN) -2440 + (LL) 1692
1D Compatibility (HY) -5200 + (ID) 450
Total energy: -54026.0 ( -125.64 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3PVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PVL-query.scw
PDB file :
Tito_Scwrl_3PVL.pdb
: