Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQAETLTSLEQVLKQIKYSLDSYYSFCVKKGFVLKVIPVRENIEEVSYLLNMIESQKDTEISTYYVDKLSKQLKEFVKKLNSWEVKPLFTSEQLSKLTTYSTFLENKE
4YBG Chain:A ((105-197))
----------EKNMTKLYRNIVDYLSKCQGKGKTLVVFTPAENITMVKSCFRYLE--DDFRDG--KIQVFDIQYLLFILKKEVMNVADL-NDEKINKFATDAFFKKDFF
General information:
TITO was launched using:
RESULT:
Template:
4YBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7578 for 497 contacts (-15.2/contact) +
2D Compatibility (PS) -9315 + (NN) -1987 + (LL) 1436
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -24194.0 ( -48.68 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_4YBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YBG-query.scw
PDB file :
Tito_Scwrl_4YBG.pdb
: