Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKKLLITGKILLAILYIIVLFAVCVLAAMAFLSLFGSKLLDVDFFTLFLSDGIFKGGLMLGIVFFLVVLDASI
3O27 Chain:A ((4-68))
-GIRKLVVLNPRAYHTTFYLLI-------PKDIAEALDIKPDDTFILNMEQKDG-------DIVLSYKRVKELKI
General information:
TITO was launched using:
RESULT:
Template:
3O27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28232 for 246 contacts (-114.8/contact) +
2D Compatibility (PS) -6788 + (NN) -781 + (LL) 1684
1D Compatibility (HY) -800 + (ID) 400
Total energy: -35317.0 ( -143.57 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_3O27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O27-query.scw
PDB file :
Tito_Scwrl_3O27.pdb
: