Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMKKWFGLLFLGLALITLAACGQKTPEDIIKTELKDSYVGYSENPGSDYPFND---GDDVLTFNKKENSITNSQGQMTYFSVIPKEEVPAGTQRVIDELETKLKGTNNFTIIINSTVKNPTKKDSEGAYQIALSDSGKAIRIFELGREPRSFGYYDFSGKAK |
3LI9 Chain:A ((211-273)) | ----------------------GEKSLSDFDVEEIKNAASDIREGIGGHVEIKDPITGKTVIMFYEPVKT-----GDFSFVLVVPKEEML------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LI9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 20827 for 357 contacts (58.3/contact) +
2D Compatibility (PS) -6226 + (NN) -1427 + (LL) 6500
1D Compatibility (HY) -4400 + (ID) 850
Total energy: 14424.0 ( 40.40 by residue)
QMean score : 0.334
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