Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIANQTIVDIVTQVVTPAIQAPFELVDVEYEKMGGDYVLSILIDKPGGITVEDTAQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKTAEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFDGETLTIDYMD---KTRHKTVDIPYQTVAKARLAVKL
1YCY Chain:A ((8-65))
--------------------------------------------------------------------------------------------EKVLKEWKGHKVAVSVG--------FTGTLEDFDEEVILLKDVVDVIGNRGKQMLIGLEDINWIMLL---
General information:
TITO was launched using:
RESULT:
Template:
1YCY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18470 for 269 contacts (-68.7/contact) +
2D Compatibility (PS) -5237 + (NN) -1534 + (LL) 7344
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -19697.0 ( -73.22 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1YCY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCY-query.scw
PDB file :
Tito_Scwrl_1YCY.pdb
: