Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSIANVTAGKVFHAWVSKGLSGASAAGIVGWVNSEGGFGKYSWNYRYVTTAELKNEGYTFYNPAKLGYQIMKSVGTVGK
3VL9 Chain:A ((88-159))
------------------------------------------------SSIPTTWKWSYSGSSIVADVAYDTFLAETASGSSKYEIMVWLAALGGAGPISSTGSTIATPTIAGVNWKLYSGPNGDTTVYSFVADSTT
General information:
TITO was launched using:
RESULT:
Template:
3VL9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4962 for 321 contacts (-15.5/contact) +
2D Compatibility (PS) -7696 + (NN) -847 + (LL) 3472
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -14033.0 ( -43.72 by residue)
QMean score : 0.054
(partial model without unconserved sides chains):
PDB file :
Tito_3VL9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VL9-query.scw
PDB file :
Tito_Scwrl_3VL9.pdb
: