Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIKIVTDSSITIEPELIKELDITVVPLSVMIDGTLY-SDNDLKAQGEFLNLMRGS-KELPKTSQPPVGVFAEIYEKLMNEGAEHIIAIHLTHTLSGTIEASRQGANIA-----GADVTVIDSTFTDQCQKFQVVEAAKLAKEGADLDTILARVEEVRQKSELFIGVSTLENLVKGGRIGRVTGLLSSLLNIKVIMELTNHELVPIVKGRGLK-TFSKWLDNFVESAQ--TRKIAEIGISYCGKADMANNFKEKLAV--LGA--PISVLETGSIIQTHTGEDAFAVMVRYE |
| 3NYI Chain:A ((4-291)) | --MYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQ-GFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NYI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133952 for 2372 contacts (-56.5/contact) +
2D Compatibility (PS) -30240 + (NN) -11904 + (LL) 8
1D Compatibility (HY) -14000 + (ID) 2950
Total energy: -193038.0 ( -81.38 by residue)
QMean score : 0.488
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