Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQKSNYFKGQIDYAVVIPVFFLLMIGLASIYVATMNDYPSNIYIAMFQQVSWIIMGCIIAFVVMLFSTEFLWKATPYLYALGLTLMVLPLIFYSPQLFAATGAKNWVTIGSVTLFQPSEFMKISYILMLSRITVSFHQKNRKTFQDDWKLLGLFGLVTLPVMILLMLQKDLGTALVFLAILSGLILLSGISWWIILPILSTIVLFIASFLMIFISPNGKEWFYNLGMDTYQINRLSAWIDPFSFADSIAYQQTQGMVSIGSGGVTGKGFNILELSVPVRESDMIFTVIAENFGFIGSAIVLGLYLIIIYRMLRITIESNNQFYTFISTGFIMMIVFHVFENIGAAVGILPLTGIPLPFISQGGSSLLSNLIGIGLVLSMSYQNTVRQAKANGSHLKYRSI |
| 2VDW Chain:B ((1-287)) | MDEIVKNIRE--GTHVLLPFYETL---PELNLSLGKSPLPSLEYGAN-------------YFLQISRVNDLNRMPTDMLKLFTHDIM--LPESDLDKVYEILK------INSVKYYGRSTKADAVVADLSARNKLFKRERDAIKSTENNLYISDYKMLTFDVFRPLFDFVNEKYCIIKLPTLFGRGVIDTMRIYCSL--FKNVRLLKCV---------SDSWLKD------------------------------SAIMVASD-------------VCKKNLDLFMSHVKSVTKSSSWKDVNSVQFSILNN--PVDTEFINKFLEFSNRVYEALYYVHSLLYSSMT--------------SDSKS-----------------IENKHQRRLVKLLL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -290548 for 2234 contacts (-130.1/contact) +
2D Compatibility (PS) -28510 + (NN) 9915 + (LL) 9408
1D Compatibility (HY) -6400 + (ID) 2000
Total energy: -308135.0 ( -137.93 by residue)
QMean score : 0.154
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