Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNYRKLIVLLLLTFFVIFMGAYAYTHIVEKRSLTSNTIEKTLPVVNQIKPQTIKEYQNYLTKVAKRNVLPVDIPQALNNEKVEITATDGMQTFTWNDKNNPKQKVIFYVHGGSYIHQASELQYIFVNKLAKKLDAKVVFPI-YPKAPTYNYSDAIPKIKKLYQNTLASVTSPKQIILVGESAGGGLALGLADNLVTEHIKQPKEIILISPWLDIATNNPKIEKVQKKDPLLKAWQ--LQQVAPYWANGKKNFKNPQVSPLYSSQFNKMAPISFFIGTHDIFYPDNQLLHQKLAKENIKHHYIVGQKMNHVYPVLP--IPEAETAFKQMLKIINH |
| 4Q3O Chain:A ((117-343)) | ------------------------------------------------------------------------------------------------------KDHVYIDIHGGAYVLFAG-LPSIEEGILIAHRLGIVVYSVDYRMPPAYPFPAALDDVKHVYR-VLSQQYDANHIFMGGTSAGGGLLLAFVQGLIENGVATPRAIYAGTPWADLTKTGDSLYTNEGIDRILITYDGTLGASARLYA-GNTPLTHPKLSPIY-GDFTDFPPTFLVTGTRDMFLSDTVRVNRKMRDAGVTTVLDVYEGLSHADYLVSHQTPESQSVYRQLKRFLVG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q3O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135562 for 1968 contacts (-68.9/contact) +
2D Compatibility (PS) -23750 + (NN) -13394 + (LL) 8072
1D Compatibility (HY) -17600 + (ID) 2850
Total energy: -185084.0 ( -94.05 by residue)
QMean score : 0.499
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