Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNHKTKKLTVLAIMIALDVFLTPIFRIEGMAF--MSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAPLAILGAGPGAFLAGWLYQFYAKDWMSWVGEFIGTGIIGALLSAPIMVWFWTWTADGNHEVLAKASAAQSIFLFMPRFIGATIIGGVIALLLLQGLKRVPVFMTIQALFKGEKVK
4HUQ Chain:S ((10-173))
----DTLSMVTMGVLMALQLVISRFSVGNNFIKVSFTFLIVALIAKWFGPWWGMLTAAVVDVIGTLMTGG-PFFIGFTVSAVLGSLIYAVFLYRQPVSWWRVIGASVLIALLVNTLLNT---LWVTIMYQTPFWSLLPVRALKELIVTPVQIVLVYLLLKSQVIQMIQARLN------------------
General information:
TITO was launched using:
RESULT:
Template:
4HUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124104 for 1147 contacts (-108.2/contact) +
2D Compatibility (PS) -16860 + (NN) -3243 + (LL) 2516
1D Compatibility (HY) -15200 + (ID) 1000
Total energy: -157891.0 ( -137.66 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_4HUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HUQ-query.scw
PDB file :
Tito_Scwrl_4HUQ.pdb
: