Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------MMDFYIKQIIIHQFSPNDTELVLSDTPLTLTPRIDDYFRKKLSKVFSDEAKRGYFGEDNVFMSHLQDDLYVSSCQIAQLWKEEFVISEDQK-----TNDLVFIQFD--------KDGMEHFAFLR--------ISLKEQFAHVSENQEQPITITQNNLPSAAQTPDEALVVNKSSKQYYLIEKRIKHNGSFANYFSENL------LQVQPEQSVKKSIKMVEQTAQK----IAENFNKDDFSFQSKMKSAIYKNLEEEQELSPEKLADQLFDDNLTARLTFVDEL--KDAIPGPVQVSDIDHSRQ-----IKKLENQKLSLSNGIELIVPNNV-------------YQDAESVEFIQNPDG---TYSILIKNIQDIQNK |
| 3LLS Chain:A ((50-475)) | PQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGNDSFGGLVFDATGIT-----EPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIERRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LLS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 55532 for 2286 contacts (24.3/contact) +
2D Compatibility (PS) -33214 + (NN) -6760 + (LL) 392
1D Compatibility (HY) -3200 + (ID) 2350
Total energy: 10400.0 ( 4.55 by residue)
QMean score : 0.149
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