Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCAFFKTDTLKSCAIDQNAGSKKSATLQIARRVKKGIGDFPKTEKGNSLIVGYPQIGLSPFLFSHVSGHVLRLPENKSTELWEDCQILNKGHCVEMRK
1GH9 Chain:A ((1-71))
MYIIFRCDCGR--ALYSREGAK-----------------TRKCVCGRTVNVKDRRIFGRADDFEEASELVRKLQEEK----YGSCHFTNPSK----RE
General information:
TITO was launched using:
RESULT:
Template:
1GH9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9838 for 409 contacts (-24.1/contact) +
2D Compatibility (PS) -7200 + (NN) -1023 + (LL) 2072
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -18539.0 ( -45.33 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1GH9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH9-query.scw
PDB file :
Tito_Scwrl_1GH9.pdb
: