Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGLKSLYTLLGL-------ISLTLLGFVAVISKQHIY-LPSFNWLDWDFNLPSPIDVGMYHYFFWGALVLFVIVLLAILVVLFYPRRYTEYKLADKTGKLMLKKSAIEGFVKTEVLKTGLMKSLSVTAHLYKKKVKVDVKGLLTSRTNVPEQLEHIQSDVELGLKEFFGLEKKMNTRVFVKQVEEENVGNAKTNKSRVE
4L6V Chain:A ((335-416))
--EGHKGLYEILTTSWHAQLAINLALLGSLTIIVAQHMYAMPPYPYQAIDY--ATQLSLFTHHMWIGGFLIVGAGAHGAIFMVRDYDPAKNVNNLLDRMLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPIFAQWVQHLHTLAPGATAPNALATASYAFGGETIAVAGKVAMMPITLGTAD
General information:
TITO was launched using:
RESULT:
Template:
4L6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53517 for 401 contacts (-133.5/contact) +
2D Compatibility (PS) -7456 + (NN) -3305 + (LL) 276
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -71552.0 ( -178.43 by residue)
QMean score : 0.076
(partial model without unconserved sides chains):
PDB file :
Tito_4L6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L6V-query.scw
PDB file :
Tito_Scwrl_4L6V.pdb
: