Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQYSEIMIRYGELSTKK-KNRMRFINKLKNNMEHVLSIYP-DV-SVKTDRDRGHVYLNGTDYHEVAESLKEIFGIQAFSPSFKVEKNVDTLVKAVQEIMTSVY----KDGMTFKITAKRSDHSFELDSRALNHTLGDAVFSVLPNIKAQMKQPDINLKVEIRDEAAYISYENIRGAGGLPVGTSGKGMLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAHDLTRKLTKFGGNIQFIEVPFTEIQEEIKEKAPEAYLMTLTRRFMMRITDRIRENRNGLVIINGESLGQVASQTLESMQAINAVTATPIIRPVVTMDKLEIIDIAQKIDTFDISIQPFEDCCTIFAPDRPKTNPKIKNTEQYEKRMDVEGLVERAVAGIMVTTIQPQADSDDVDDLIDDLL |
| 1VBK Chain:A ((1-307)) | --MNVVIVRYGEIGTKSRQTRSWFEKILMNNIREALVTEEVPYKEIFSRHGRIIVKTNS--PKEAANVLVRVFGIVSISPAMEVEASLEKINRTALLMFRKKAKEVGKERPKFRVTARRITKEFPLDSLEIQAKVGEYILNN-ENCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEGRMIGILHDE-LSALAIFLMMKRGVEVIPVYIGKD----DKNLEKVRSLWNLL---K--RYSY--GSKGF---L---------VV---AESFDRVLKLIRDFGVKGVIKGLRPNDLNSEVSE-ITEDFKMFPVPVYYPLIALPEEYIKSVKERLGL----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VBK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141025 for 2388 contacts (-59.1/contact) +
2D Compatibility (PS) -32320 + (NN) -12662 + (LL) 6736
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -201371.0 ( -84.33 by residue)
QMean score : 0.504
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