Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLNDNNQKKWKNRTLTSSMEFAVTGIFTAFKEERNMRKHLVSAILVILAGLTFQVSMVEWLFLLLSIFLVITFEIINSAIENVVD-LASNYHFSMLAKNAKDMAAGAVLVVSLFAVLVGLIIFIPKILALLL
4BRR Chain:B ((32-119))
----------------------------AAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYH--ELSGRAKDLGSAAVLIAIIDAVITWAILLWSHF-----
General information:
TITO was launched using:
RESULT:
Template:
4BRR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50162 for 483 contacts (-103.9/contact) +
2D Compatibility (PS) -9256 + (NN) -6508 + (LL) 2408
1D Compatibility (HY) -11200 + (ID) 1600
Total energy: -76318.0 ( -158.01 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_4BRR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BRR-query.scw
PDB file :
Tito_Scwrl_4BRR.pdb
: