Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTILLGLVGLSAMTLAACSNGQSSKETTWDNIKKDGVLKVATPATLYPTSYYDDHKKLTGYEIDMMKAIAKKLKIKVKFVEVGVAESFTSVDSGKVDVAVNNFDTTPERLKKYNFSQPYKYSVGGMIVRADGSSKITAKDLSDWKGKKAGGGAGTQYMKIA----KQQGAEPVIYDNVTNDVYLRDVSTGRTDFIPNDYYTQVIAVKYVTKQ-----YPDIKVKMGDVKYNPTEQGIVMSKKDKSLKTKIDAAIKDMKKDGSLKKISEKYYAGQDLTKEPAGTDKIPVIKVK |
1LAF Chain:E ((6-231)) | ---------------------------------------VRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKL-YAADSRLIAAKGSP--IQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYAN--QDLIYSDLTAGRLDAALQD---EVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LAF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27122 for 1802 contacts (-15.1/contact) +
2D Compatibility (PS) -23543 + (NN) -8416 + (LL) 3468
1D Compatibility (HY) -11200 + (ID) 2950
Total energy: -69763.0 ( -38.71 by residue)
QMean score : 0.460
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