Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQFLGEFLGTFILVLLGDGVVAGNVLSKTKEEGTGWTAIVFGWGIACTVAVYVSGLFSPAHLNPAVTLAMASIGAISWGQVIPFIIAQMLGAMVAATILWLHYY-PHWKETKDSGLILASFSTGPAIRHTPSNLLGEIIGTAILVITIM-AIGPSKVAAG-----LGPIIVGIVIFAVGFSLGPTTGYAINPARDLGPRLMHAILPIENKGDSDWSYAWIPVVGPIIGGVLGAILYNIALTLI
4JC6 Chain:A ((42-264))
----IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGA----AVIFNSNK---VWDDQWIFWVGPFIGAAVAAAYHQYVLRAA
General information:
TITO was launched using:
RESULT:
Template:
4JC6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183256 for 1931 contacts (-94.9/contact) +
2D Compatibility (PS) -21714 + (NN) 2588 + (LL) 916
1D Compatibility (HY) -18000 + (ID) 3350
Total energy: -222816.0 ( -115.39 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_4JC6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JC6-query.scw
PDB file :
Tito_Scwrl_4JC6.pdb
: