Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYKVFYQETKERNPRREQTKTLYVTIDAANELEGRIAARKLVEENTAYNIEFIELLSDKHLEYEKETGVFELTEF
1XNQ Chain:G ((85-123))
------YQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHY
General information:
TITO was launched using:
RESULT:
Template:
1XNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10584 for 175 contacts (60.5/contact) +
2D Compatibility (PS) -3935 + (NN) 2214 + (LL) 892
1D Compatibility (HY) -400 + (ID) 750
Total energy: 8605.0 ( 49.17 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1XNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XNQ-query.scw
PDB file :
Tito_Scwrl_1XNQ.pdb
: