Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIVEGVSLHLIKNQQFKTNHLTFRFSGDFNNKTVARRSLVAQMLVTANAKYPKVQEFREKLASLYGASLSTKISTKGLVHIVDIDIVFVKNTFTLEQENIVEQIITFLEDMLFSPLISLEQYQTSIFDTEKKNLIQYLEADIEDNFYSSDLALKSLFYNNKTLRLPKYGTASLVESENSFTAYQEFQKMLKEDQLDIFVVGDFDDYRMIQAFNRMAFEPRHKVLAFDYTQTYENITRSQVEDKDVNQSIMQLAYHLP-ITYKDEDYFALIVFN-GLFGAFAHSLLFTEIREKQGLAYTIGSQFDS--FTGLFTIYAGIDKENRERFLKLINKQFNNIKMGRFSSTLLKQTKDILKMNYVLASDNPKVIVDHI-----------YHEHYLDQFHTSALFIDKVDDVTKSDIVSVATKLKLQAFYFLEGN |
3AMJ Chain:B ((228-393)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPRATVERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQ--AVTVEQVREAFARHVKRENLITVVVGGK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97067 for 998 contacts (-97.3/contact) +
2D Compatibility (PS) -15504 + (NN) -1483 + (LL) 19344
1D Compatibility (HY) -6000 + (ID) 2100
Total energy: -102810.0 ( -103.02 by residue)
QMean score : 0.508
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