Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MVNEKRLLEEFLELVQIDSETKHEAEICKVLKRKFSDLGVDVKEDDTMDITGHGAGNLICTLKGTKQTDTIYFTSHMDTVVPGNGVK--------PVVENGYVKTDGTTILGADDKAGLAAMFEAIKVLKEENIEH-GTIEFIITVGEESGLIGAKALDRSMITASYGYALDSDGKVGNIIVAAPT---------QAKVRAAIFGKTAHAGVE-----PEKGISAITIASKAISKMPLGRIDE------ETTANIGRFEGGT-QTNIVCDEVHILAEARSLVPEKMEAQV-QKMKAAFEEAAADMGGRAEVEIEVMYPGFKYQDGDQVVEIAKKAAAK-IGRPSELQTSGGGSDANVIAGHGIPTVNLAVGYEQIHTKNEKMPIEELVKTAEMVVAIIEEAAK 1VGY Chain:A ((2-372)) --TETQSLELAKELISRPSVTPDDRDCQKLMAERLHKIGFAAEEMH------FGNTKNIWLRRGTK-APVVCFAGHTD-VVPTGPVEKWDSPPFEPAERDGRLYGRG----AADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEE-----GDALDGTTKVVDVLKARDE--LIDYCIVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFR-FSTESTEAGLKQRVHAILDK----HGVQYDLQWSCSGQPFLTQAG-KLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQELIELGPSNATIHQINENVRLNDIPKLSAVYEGIL-----

General information: TITO was launched using: RESULT: Template: 1VGY.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1734 60455 34.86 178.33 target 2D structure prediction score : 0.63 Monomeric hydrophicity matching model chain A : 0.73 3D Compatibility (PKB) : 34.86 2D Compatibility (Sec. Struct. Predict.) : 0.63 1D Compatibility (Hydrophobicity) : 0.73 QMean score : 0.402

(partial model without unconserved sides chains): PDB file : Tito_1VGY.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1VGY-query.scw PDB file : Tito_Scwrl_1VGY.pdb: