Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAINKAVSIDTAFQTIMQELRERSARFLGTKQAVSEEKAEFDCPYCKDRGIVVYRVHKDTSWHLDEQLDLMVPDDMVSEDDFLLGKVCTPDKASEWKDTYSKQCECVRRKKIARLMAASGITEEFEKLLFGNFITDGKPDMIKDAYECAVEYYKDFQKIKGERQNSIALLGQPGSGKTHLLTAIMNNLIKKKSVHCMYFP---YVEGMGD-LKANFDNLEAKLDAMRKVEVLFIDDLFKPINGQPRATDWQVEQIQSVLNYRYLNHKPLLISSELTIDEILDIDEALGSRIHQMCRDYIVIIRGDRMQLNHRLGDWE
3R8F Chain:A ((12-159))-----------------------------------------------------------------------------------------------------------------------------------NFIV-GEGNRL--AYEVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQA-AGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTIN-EFR-NMYKSVDLLLLDDV-QFLSGKERT---QIEFFH-IFNTLYLLEKQIILASDRHPQKLDGVSDRLVSR---------------------------


General information:
TITO was launched using:
RESULT:

Template: 3R8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 595 -18442 -30.99 -131.73
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -30.99
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.423

(partial model without unconserved sides chains):
PDB file : Tito_3R8F.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3R8F-query.scw
PDB file : Tito_Scwrl_3R8F.pdb: