Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTVLGIETSCDETGVGIARLDPDGTVTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPAMRRALAAAGLKQPDI--VAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYEHGPLPEC--VALLVSGGHTHLLHVRSLGEPIIELGSTVDDAAGEAYDKVARLLGLGYPGGKALDDLARTGDRDAIVFPRGMSGPADDR--YAFSFSGLKTAVARYVESHAADPGFRTADIAAGFQEAVADVLTMKAVRAATALGVSTLLIAGGVAANSRLR----ELATQRCGEAGRTLRIPSPRLCTDNGAMIAAFAAQLVAAGAPPSPLDVPSDPGLPVMQGQVR |
| 4YDU Chain:B ((3-333)) | ---VLGIETSCDETGIAIY----DDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWDVPAIPVHHMEGHLLAPMLEDNP-PEFPFVALLVSGGHTQLISVTGIGQYEL-LGESIDDAAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPR----PMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTR-ADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGE----VFYARPEFCTDNGAMIAYAGMVRFKAGA-TADLGVSVRPRWPLAE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215663 for 2886 contacts (-74.7/contact) +
2D Compatibility (PS) -35266 + (NN) -22933 + (LL) 764
1D Compatibility (HY) -26000 + (ID) 8050
Total energy: -307148.0 ( -106.43 by residue)
QMean score : 0.542
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