Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDAPLRIALIGAGNMGRQHYHRLQRIAGA--------RLCAVADPQGQA----FAADTGVPW-FGDHRRLLEEARPQAAIVANPNNLHVATALDCLAAGVPLLLEKPVGVQLDEVSELVAVARRSGVPLLVGHHRRHNPLVVRARQLIAEGALGRLLSVTALW-QLKKPDSYFEVAWRREP---GAGMLLTNLIHDLDLLRHLCGEVREVQALAGNAIRGLP----------NEDNIALLLRFANGALGSLTGCDAAAAPW---SWELAAGENPVYPRQAEQPCYLLAGTEGALSLPQLRRWRYAEARQGWHDPLAASEEAVATGDPLQRQLEHFVRVARGEEAPLMDATDAARTLALVEAVREAARSGRACAPASF |
| 4GQA Chain:A ((25-309)) | --ARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALAD-QDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQIIARGDIGEPVRFRGTFDQGFYNDPNLPWSWRCSKTLGGSGALGDLGAHTLSVAQFLLGGIREVTASAQTCLRQRPVPDAEWREVENDDQVQCLVNFDSGAAGVIEASRIAAGRIFGVFWEVSGTEGTLYMDGERFNELQVYRFNDDKHDRGFKTLYAGSQIPAYAGFFGFDFGGGGLGYFDVKVIEVHDLVQGICGDDDCYPNFEFGLQNQRVLSAIEASMVSRRWVNVV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153516 for 1867 contacts (-82.2/contact) +
2D Compatibility (PS) -26046 + (NN) -8872 + (LL) -8
1D Compatibility (HY) -10800 + (ID) 4150
Total energy: -203392.0 ( -108.94 by residue)
QMean score : 0.348
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