Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSDVIKGKWKQLTGKIKERWGDLTDDDLQAADGHAEYLVGKLQERYGWSKERAEQEVRDFSDRL----
1RYK Chain:A ((1-69))
MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNEYRW
General information:
TITO was launched using:
RESULT:
Template:
1RYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4096 for 414 contacts (-9.9/contact) +
2D Compatibility (PS) -7036 + (NN) -1995 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 1750
Total energy: -18877.0 ( -45.60 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1RYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYK-query.scw
PDB file :
Tito_Scwrl_1RYK.pdb
: