Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA
2NNQ Chain:A ((1-131))
-CDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA
General information:
TITO was launched using:
RESULT:
Template:
2NNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39588 for 927 contacts (-42.7/contact) +
2D Compatibility (PS) -14781 + (NN) -4490 + (LL) 208
1D Compatibility (HY) -18400 + (ID) 6500
Total energy: -83551.0 ( -90.13 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2NNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NNQ-query.scw
PDB file :
Tito_Scwrl_2NNQ.pdb
: