Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKFCKGKTPSC
1C1J Chain:A ((2-122))
----------------------LLQFRKMIKKMTGKEPVVSYAFYGCYCGSGGRGKPKNATDRCCFVHDCCYEKVT--GCDPKWDDYTYSWKNGTIVCGGD-DPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC
General information:
TITO was launched using:
RESULT:
Template:
1C1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41859 for 890 contacts (-47.0/contact) +
2D Compatibility (PS) -13279 + (NN) -10450 + (LL) 2904
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -77784.0 ( -87.40 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_1C1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C1J-query.scw
PDB file :
Tito_Scwrl_1C1J.pdb
: