Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
3SU8 Chain:A ((1-178))
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK-------------
General information:
TITO was launched using:
RESULT:
Template:
3SU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137626 for 1417 contacts (-97.1/contact) +
2D Compatibility (PS) -19288 + (NN) -10608 + (LL) 584
1D Compatibility (HY) -24800 + (ID) 6400
Total energy: -198138.0 ( -139.83 by residue)
QMean score : 0.764
(partial model without unconserved sides chains):
PDB file :
Tito_3SU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SU8-query.scw
PDB file :
Tito_Scwrl_3SU8.pdb
: