Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
4LYJ Chain:A ((3-167))
-TEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKH----------------
General information:
TITO was launched using:
RESULT:
Template:
4LYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99000 for 1335 contacts (-74.2/contact) +
2D Compatibility (PS) -17839 + (NN) -4564 + (LL) 1196
1D Compatibility (HY) -17600 + (ID) 4700
Total energy: -142507.0 ( -106.75 by residue)
QMean score : 0.710
(partial model without unconserved sides chains):
PDB file :
Tito_4LYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYJ-query.scw
PDB file :
Tito_Scwrl_4LYJ.pdb
: