Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4M1Y Chain:C ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHFV---------SYRKQVVIDGETSLLDILDTAG-------RDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111179 for 1258 contacts (-88.4/contact) +
2D Compatibility (PS) -16907 + (NN) -8262 + (LL) 1760
1D Compatibility (HY) -19200 + (ID) 6700
Total energy: -160488.0 ( -127.57 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_4M1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1Y-query.scw
PDB file :
Tito_Scwrl_4M1Y.pdb
: