Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
4IJQ Chain:C ((11-223))
-----PGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSY--------IKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
General information:
TITO was launched using:
RESULT:
Template:
4IJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182611 for 1615 contacts (-113.1/contact) +
2D Compatibility (PS) -23081 + (NN) -12744 + (LL) 272
1D Compatibility (HY) -34000 + (ID) 10250
Total energy: -262414.0 ( -162.49 by residue)
QMean score : 0.720
(partial model without unconserved sides chains):
PDB file :
Tito_4IJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IJQ-query.scw
PDB file :
Tito_Scwrl_4IJQ.pdb
: