Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKI--IDDNIIHASS-------IESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESI--EMDTFLK-----------------FPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
3EEK Chain:A ((3-217))
--KVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSMD--LADHWLITKI-MPLPETTIPQMDTFLQKQELEQRFYDNSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKK
General information:
TITO was launched using:
RESULT:
Template:
3EEK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114001 for 1340 contacts (-85.1/contact) +
2D Compatibility (PS) -19695 + (NN) -1192 + (LL) 176
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -158362.0 ( -118.18 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3EEK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEK-query.scw
PDB file :
Tito_Scwrl_3EEK.pdb
: