Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
2XP4 Chain:A ((11-167))
------LPPGWEKAMSRSSGRVYYFNHITNASQWERP-------------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
2XP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32790 for 1085 contacts (-30.2/contact) +
2D Compatibility (PS) -15492 + (NN) -10112 + (LL) -400
1D Compatibility (HY) -15600 + (ID) 7150
Total energy: -81544.0 ( -75.16 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2XP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XP4-query.scw
PDB file :
Tito_Scwrl_2XP4.pdb
: