Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG
1VFN Chain:A ((1-279))
---GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPE-------GRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD--SQGKANHEEVLEAGKQAAQKLEQFVSLLMASI-------
General information:
TITO was launched using:
RESULT:
Template:
1VFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182683 for 2258 contacts (-80.9/contact) +
2D Compatibility (PS) -28950 + (NN) -15233 + (LL) 336
1D Compatibility (HY) -39600 + (ID) 13450
Total energy: -279580.0 ( -123.82 by residue)
QMean score : 0.710
(partial model without unconserved sides chains):
PDB file :
Tito_1VFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFN-query.scw
PDB file :
Tito_Scwrl_1VFN.pdb
: