Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
3NW9 Chain:A ((3-215))
----------------------------------------------------DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGP------
General information:
TITO was launched using:
RESULT:
Template:
3NW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148059 for 1854 contacts (-79.9/contact) +
2D Compatibility (PS) -23335 + (NN) -9771 + (LL) 4724
1D Compatibility (HY) -30000 + (ID) 8650
Total energy: -215091.0 ( -116.01 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_3NW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NW9-query.scw
PDB file :
Tito_Scwrl_3NW9.pdb
: